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/
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Get Bonus Downloads Here.url
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0.2 KB
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/.../01 - Important Massage Before Start of The Course/
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001 Important Massage from Instructors.mp4
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4.5 MB
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001 Important Massage from Instructors_en.srt
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1.0 KB
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/.../02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/
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001 What is Protein.mp4
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53.8 MB
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001 What is Protein_en.srt
|
8.0 KB
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002 Experimental Techniques to Determine 3D Structure of Protein.mp4
|
4.8 MB
|
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002 Experimental Techniques to Determine 3D Structure of Protein_en.srt
|
2.8 KB
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003 Practical-1 How To Download Protein Structure From Protein Databank.mp4
|
94.4 MB
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003 Practical-1 How To Download Protein Structure From Protein Databank_en.srt
|
18.0 KB
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004 Practical-2 Visualization of 3D Structure of Protein Using Pymol.mp4
|
37.3 MB
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004 Practical-2 Visualization of 3D Structure of Protein Using Pymol_en.srt
|
9.3 KB
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005 Fixing the Missing Residues in Protein 3D Structure Downloaded.mp4
|
16.8 MB
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005 Fixing the Missing Residues in Protein 3D Structure Downloaded_en.srt
|
3.3 KB
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006 Practical-3 Fixing Missing Residues Issue With Modeller.mp4
|
107.1 MB
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006 Practical-3 Fixing Missing Residues Issue With Modeller_en.srt
|
22.7 KB
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006 alignment.ali
|
1.5 KB
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006 script1.py
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0.2 KB
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006 script2.py
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0.5 KB
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006 script3.py
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0.6 KB
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007 Intro to Protein 3D Structure Prediction.mp4
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2.5 MB
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007 Intro to Protein 3D Structure Prediction_en.srt
|
2.0 KB
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008 Modeller-access-in-MAC.mp4
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9.9 MB
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008 Practical-4 How to Predict 3D Structure Using Modeller (Homology).mp4
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272.3 MB
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008 Practical-4 How to Predict 3D Structure Using Modeller (Homology)_en.srt
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36.3 KB
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008 pdb-95.pir
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5.1 MB
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008 qseq1.ali
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1.1 KB
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008 script1.py
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1.3 KB
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008 script2.py
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0.5 KB
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008 script3.py
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0.4 KB
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008 script4.py
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0.4 KB
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008 script5.py
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0.5 KB
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008 tseq1.pdb
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655.5 KB
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008 tseq2.pdb
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655.5 KB
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008 tseq3.pdb
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655.5 KB
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008 tseq4.pdb
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655.5 KB
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009 Practical-5 How to Use I-TASSER for Prediction of 3D Structure.mp4
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127.8 MB
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009 Practical-5 How to Use I-TASSER for Prediction of 3D Structure_en.srt
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15.3 KB
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010 Practical-6 Introduction of Alpha-Fold Database and Alpha-Fold Colab.mp4
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30.3 MB
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010 Practical-6 Introduction of Alpha-Fold Database and Alpha-Fold Colab_en.srt
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7.6 KB
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/.../03 - Module-2 Theory of Molecular Dynamics Simulations/
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001 Basic Introduction of Molecular Dynamic Simulations and its Steps.mp4
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15.6 MB
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001 Basic Introduction of Molecular Dynamic Simulations and its Steps_en.srt
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1.6 KB
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002 Basic Theory of Molecular Dynamics Simulation (Part-1).mp4
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5.2 MB
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002 Basic Theory of Molecular Dynamics Simulation (Part-1)_en.srt
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3.0 KB
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003 Basic Theory of Molecular Dynamics Simulation (Part-2).mp4
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7.8 MB
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003 Basic Theory of Molecular Dynamics Simulation (Part-2)_en.srt
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4.4 KB
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004 Basic Theory of Molecular Dynamics Simulation (Part-3).mp4
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6.7 MB
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004 Basic Theory of Molecular Dynamics Simulation (Part-3)_en.srt
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3.9 KB
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005 Basic Theory of Molecular Dynamics Simulation (Part-4).mp4
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6.3 MB
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005 Basic Theory of Molecular Dynamics Simulation (Part-4)_en.srt
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2.3 KB
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006 MD (Molecular Dynamics Simulation) Cycle.mp4
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8.3 MB
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006 MD (Molecular Dynamics Simulation) Cycle_en.srt
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2.8 KB
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007 Basic Steps of Molecular Dynamics Simulations.mp4
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1.7 MB
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007 Basic Steps of Molecular Dynamics Simulations_en.srt
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0.9 KB
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008 Protein Structure Preparation for Molecular Dynamics Simulations.mp4
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8.6 MB
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008 Protein Structure Preparation for Molecular Dynamics Simulations_en.srt
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4.0 KB
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009 Preparation of Topology File for Molecular Dynamics Simulations.mp4
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5.5 MB
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009 Preparation of Topology File for Molecular Dynamics Simulations_en.srt
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2.9 KB
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010 Solvation and Ionization of System.mp4
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21.0 MB
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010 Solvation and Ionization of System_en.srt
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1.6 KB
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011 Energy Minimization (EM) of System.mp4
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2.9 MB
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011 Energy Minimization (EM) of System_en.srt
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1.8 KB
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012 Equilibration and Production Phase of Molecular Dynamics Simulation.mp4
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17.6 MB
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012 Equilibration and Production Phase of Molecular Dynamics Simulation_en.srt
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2.0 KB
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/.../04 - Module 3 Computer Operating System Used for Molecular Dynamics Simulation/
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001 Basic Type of Operating System Available in Market.mp4
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4.4 MB
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001 Basic Type of Operating System Available in Market_en.srt
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2.6 KB
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002 Features of Linux Operating System.mp4
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5.0 MB
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002 Features of Linux Operating System_en.srt
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2.9 KB
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003 Terminal of Linux Operating System.mp4
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1.6 MB
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003 Terminal of Linux Operating System_en.srt
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1.2 KB
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004 Some Basic Commands for Linux Operating System.mp4
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28.1 MB
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004 Some Basic Commands for Linux Operating System_en.srt
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4.7 KB
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005 What's Next.mp4
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4.4 MB
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005 What's Next_en.srt
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2.4 KB
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/.../05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/
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001 Practical-7 Installation of Linux in Windows Environment.mp4
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31.8 MB
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001 Practical-7 Installation of Linux in Windows Environment_en.srt
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6.1 KB
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002 Commands-to-Install-GROMACS-Using-Linux-Terminal.pdf
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94.1 KB
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002 Practical-8 Installation of GROMACS.mp4
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44.1 MB
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002 Practical-8 Installation of GROMACS_en.srt
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6.9 KB
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003 Modules of GROMACS Used in Molecular Dynamics Tutorial.mp4
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4.7 MB
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003 Modules of GROMACS Used in Molecular Dynamics Tutorial_en.srt
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3.5 KB
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004 Work Flow of Molecular Dynamics in GROMACS.mp4
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15.8 MB
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004 Work Flow of Molecular Dynamics in GROMACS_en.srt
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5.8 KB
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005 Practical-9 Creating Folder in Ubuntu For Molecular Dynamics Simulations.mp4
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20.3 MB
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005 Practical-9 Creating Folder in Ubuntu For Molecular Dynamics Simulations_en.srt
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5.1 KB
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006 Commands to Run Molecular Dynamics Simulations (For You).mp4
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3.8 MB
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006 Commands to Run Molecular Dynamics Simulations (For You)_en.srt
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1.7 KB
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006 Commands-to-run-MD-simulation-of-Protein-in-Water.pdf
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89.7 KB
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007 Practical-10 Cleaning Protein Structure For Molecular Dynamics Simulations.mp4
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17.4 MB
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007 Practical-10 Cleaning Protein Structure For Molecular Dynamics Simulations_en.srt
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6.1 KB
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008 Practical-11 Creation of Topology File In GROMACS.mp4
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51.8 MB
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008 Practical-11 Creation of Topology File In GROMACS_en.srt
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7.2 KB
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009 Practical-12 Solvation of Step in Molecular Dynamics Simulation.mp4
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43.1 MB
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009 Practical-12 Solvation of Step in Molecular Dynamics Simulation_en.srt
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6.7 KB
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010 Practical-13 Ionization Step in Molecular Dynamics Simulation.mp4
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35.6 MB
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010 Practical-13 Ionization Step in Molecular Dynamics Simulation_en.srt
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8.5 KB
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010 ions.mdp
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1.1 KB
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011 Practical-14 Energy Minimization (EM) in GROMACS.mp4
|
50.9 MB
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011 Practical-14 Energy Minimization (EM) in GROMACS_en.srt
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7.1 KB
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011 minim.mdp
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1.1 KB
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012 Practical-15 Equilibration Phase-I (Part-A).mp4
|
23.0 MB
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012 Practical-15 Equilibration Phase-I (Part-A)_en.srt
|
7.8 KB
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012 nvt.mdp
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2.4 KB
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013 Practical-16 Equilibration Phase-I (Part-B).mp4
|
15.7 MB
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013 Practical-16 Equilibration Phase-I (Part-B)_en.srt
|
3.1 KB
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014 Practical-17 Equilibration Phase-II (Part-A).mp4
|
25.4 MB
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014 Practical-17 Equilibration Phase-II (Part-A)_en.srt
|
3.2 KB
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014 npt.mdp
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2.6 KB
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015 Practical-18 Equilibration Phase-II (Part-B).mp4
|
15.3 MB
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015 Practical-18 Equilibration Phase-II (Part-B)_en.srt
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4.4 KB
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016 Understanding md.mdp File Before Final Phase.mp4
|
13.3 MB
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016 Understanding md.mdp File Before Final Phase_en.srt
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2.9 KB
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017 Practical-19 Running Molecular Dynamics Simulation Final Phase.mp4
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14.1 MB
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017 Practical-19 Running Molecular Dynamics Simulation Final Phase_en.srt
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5.3 KB
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017 md.mdp
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2.8 KB
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018 Basic Theory of Molecular Dynamics Simulation Data Analysis.mp4
|
15.0 MB
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018 Basic Theory of Molecular Dynamics Simulation Data Analysis_en.srt
|
8.3 KB
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019 Commands for Analysis of Molecular Dynamics Simulation Data.mp4
|
7.9 MB
|
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019 Commands for Analysis of Molecular Dynamics Simulation Data_en.srt
|
1.2 KB
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019 Commands-to-Analyze-the-MD-Data.pdf
|
68.5 KB
|
|
020 Bringing the Protein in Center Before Data Analysis.mp4
|
8.5 MB
|
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020 Bringing the Protein in Center Before Data Analysis_en.srt
|
5.0 KB
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021 Practical-20 Calculation of RMSD.mp4
|
12.0 MB
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021 Practical-20 Calculation of RMSD_en.srt
|
4.3 KB
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022 Practical-21 Calculation of RMSF.mp4
|
11.4 MB
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022 Practical-21 Calculation of RMSF_en.srt
|
3.6 KB
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023 Practical-22 Calculation of Radius of Gyration (Rg).mp4
|
10.1 MB
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023 Practical-22 Calculation of Radius of Gyration (Rg)_en.srt
|
3.1 KB
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024 Practical-23 Calculation of Total Number of Hydrogen bonds (Hb).mp4
|
7.1 MB
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024 Practical-23 Calculation of Total Number of Hydrogen bonds (Hb)_en.srt
|
3.8 KB
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025 Practical-24 Calculation of Solvent Accessible Surface Area (SASA).mp4
|
23.7 MB
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025 Practical-24 Calculation of Solvent Accessible Surface Area (SASA)_en.srt
|
3.4 KB
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026 Practical-25 Opening of XVG Files in Excel.mp4
|
42.6 MB
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026 Practical-25 Opening of XVG Files in Excel_en.srt
|
7.2 KB
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027 Practical-25.1 Visualization of MD Trajectory in Pymol.mp4
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38.3 MB
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027 Practical-25.1 Visualization of MD Trajectory in Pymol_en.srt
|
5.2 KB
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/.../06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/
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|
001 Introduction of Docking-Part-1.mp4
|
3.3 MB
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001 Introduction of Docking-Part-1_en.srt
|
1.8 KB
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002 Introduction of Docking-Part-2.mp4
|
3.1 MB
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002 Introduction of Docking-Part-2_en.srt
|
1.8 KB
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003 Sampling Algorithms-Part-1.mp4
|
2.0 MB
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003 Sampling Algorithms-Part-1_en.srt
|
0.9 KB
|
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004 Sampling Algorithms-Part-2.mp4
|
1.7 MB
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004 Sampling Algorithms-Part-2_en.srt
|
1.3 KB
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005 Sampling Algorithms-Part-3.mp4
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17.2 MB
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005 Sampling Algorithms-Part-3_en.srt
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1.5 KB
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006 Sampling Algorithms-Part-4.mp4
|
8.3 MB
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006 Sampling Algorithms-Part-4_en.srt
|
4.1 KB
|
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007 Scoring Algorithms.mp4
|
6.0 MB
|
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007 Scoring Algorithms_en.srt
|
3.7 KB
|
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008 Types of Docking.mp4
|
2.9 MB
|
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008 Types of Docking_en.srt
|
2.1 KB
|
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009 Basic Steps in Docking Protocol.mp4
|
8.4 MB
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009 Basic Steps in Docking Protocol_en.srt
|
2.0 KB
|
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010 Theory of Docking Steps-Part-1.mp4
|
7.4 MB
|
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010 Theory of Docking Steps-Part-1_en.srt
|
4.3 KB
|
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011 Theory of Docking Steps-Part-2.mp4
|
5.9 MB
|
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011 Theory of Docking Steps-Part-2_en.srt
|
3.8 KB
|
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012 MD-3-Installation-of-Docking-Software-10-Silent.txt
|
0.4 KB
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012 Practical-26 Installation of MGL Tools, Vina, AutoDock4 & Autogrid.mp4
|
24.1 MB
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012 Practical-26 Installation of MGL Tools, Vina, AutoDock4 & Autogrid_en.srt
|
6.6 KB
|
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013 MD-3-Installation-of-Ligand-Software-11-Silent.txt
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0.2 KB
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013 Practical-27 Installation of Ligand Drawing Tools.mp4
|
13.3 MB
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013 Practical-27 Installation of Ligand Drawing Tools_en.srt
|
5.3 KB
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014 Practical-28 Downloading and Preparation of Protein 3D Structure for Docking.mp4
|
70.8 MB
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014 Practical-28 Downloading and Preparation of Protein 3D Structure for Docking_en.srt
|
14.8 KB
|
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015 Issue With Protein Structure Preparation in MGL Tools.mp4
|
7.3 MB
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015 Issue With Protein Structure Preparation in MGL Tools_en.srt
|
2.5 KB
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016 Practical-29 Downloading of Ligand 3D Structure from ZINC Database.mp4
|
35.1 MB
|
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016 Practical-29 Downloading of Ligand 3D Structure from ZINC Database_en.srt
|
9.7 KB
|
|
017 Practical-30 Drawing of Ligand Structure in ChemSketch.mp4
|
65.2 MB
|
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017 Practical-30 Drawing of Ligand Structure in ChemSketch_en.srt
|
15.2 KB
|
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018 Practical-31 Preparation of Ligand Molecule for Docking.mp4
|
57.2 MB
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018 Practical-31 Preparation of Ligand Molecule for Docking_en.srt
|
10.7 KB
|
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018 ligand.pdb
|
6.7 KB
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019 Practical-32 Prediction of Active Site of Protein.mp4
|
40.0 MB
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019 Practical-32 Prediction of Active Site of Protein_en.srt
|
5.6 KB
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020 Practical-33 Setting Grid.mp4
|
52.5 MB
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020 Practical-33 Setting Grid_en.srt
|
9.0 KB
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021 Very Important Step; Be Careful Here.mp4
|
16.6 MB
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021 Very Important Step; Be Careful Here_en.srt
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2.8 KB
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022 Practical-34 (Part-A) Performing Docking with Vina.mp4
|
31.1 MB
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022 Practical-34 (Part-A) Performing Docking with Vina_en.srt
|
11.1 KB
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022 conf.txt
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0.2 KB
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023 Practical-34 (Part-B) Visualization of Vina Docking Data.mp4
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25.8 MB
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023 Practical-34 (Part-B) Visualization of Vina Docking Data_en.srt
|
6.1 KB
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024 Practical-35 (Part-A) Performing Docking Using AutoDock4.mp4
|
87.0 MB
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024 Practical-35 (Part-A) Performing Docking Using AutoDock4_en.srt
|
12.7 KB
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025 Practical-35 (Part-B) Visualization of AutoDock4 Docking Results.mp4
|
22.1 MB
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025 Practical-35 (Part-B) Visualization of AutoDock4 Docking Results_en.srt
|
7.1 KB
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026 Practical-33 Preforming Docking with CB Dock.mp4
|
27.7 MB
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026 Practical-33 Preforming Docking with CB Dock_en.srt
|
9.4 KB
|
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027 Practical-34 Analyzing the Docking Data.mp4
|
63.9 MB
|
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027 Practical-34 Analyzing the Docking Data_en.srt
|
13.4 KB
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028 Practical-35 PatchDock; Shape Complementary Docking Program.mp4
|
83.9 MB
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028 Practical-35 PatchDock; Shape Complementary Docking Program_en.srt
|
10.8 KB
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/.../07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/
|
|
001 Biggest Drawback of Conventional Docking Protocol.mp4
|
5.3 MB
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001 Biggest Drawback of Conventional Docking Protocol_en.srt
|
2.1 KB
|
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002 Difference Between Simple MD Simulation Vs Protein-Ligand MD Simulations.mp4
|
1.4 MB
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002 Difference Between Simple MD Simulation Vs Protein-Ligand MD Simulations_en.srt
|
1.3 KB
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003 Basic Steps of Protein-Ligand MD Simulations.mp4
|
3.5 MB
|
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003 Basic Steps of Protein-Ligand MD Simulations_en.srt
|
1.8 KB
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004 Practical-36 Very First Step; Preparation of Protein and Ligand.mp4
|
31.4 MB
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004 Practical-36 Very First Step; Preparation of Protein and Ligand_en.srt
|
4.0 KB
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005 Practical-37 Necessary Files Needed For Molecular Dynamics Simulations.mp4
|
9.6 MB
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005 Practical-37 Necessary Files Needed For Molecular Dynamics Simulations_en.srt
|
3.4 KB
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005 cgenff-charmm2gmx.py
|
37.8 KB
|
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005 em.mdp
|
1.2 KB
|
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005 ie.mdp
|
2.7 KB
|
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005 ions.mdp
|
1.0 KB
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005 md.mdp
|
2.6 KB
|
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005 npt.mdp
|
2.7 KB
|
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005 nvt.mdp
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2.5 KB
|
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005 sort-mol2-bonds.pl
|
3.5 KB
|
|
006 Commands to Run Ligand-Protein Molecular Dynamics Simulations.mp4
|
3.1 MB
|
|
006 Commands to Run Ligand-Protein Molecular Dynamics Simulations_en.srt
|
1.4 KB
|
|
006 Commands-for-MD-Ligand-Protein-Complex.pdf
|
84.0 KB
|
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007 Practical-38 Preparation of Protein Topology File.mp4
|
33.2 MB
|
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007 Practical-38 Preparation of Protein Topology File_en.srt
|
5.9 KB
|
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008 Practical-39 Preparation of Ligand Topology File.mp4
|
37.3 MB
|
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008 Practical-39 Preparation of Ligand Topology File_en.srt
|
8.1 KB
|
|
009 Practical-40 Making Complex.mp4
|
42.9 MB
|
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009 Practical-40 Making Complex_en.srt
|
8.8 KB
|
|
010 Practical-41 Solvation, Ionization & Energy Minimization of Complex.mp4
|
19.8 MB
|
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010 Practical-41 Solvation, Ionization & Energy Minimization of Complex_en.srt
|
6.3 KB
|
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011 Practical-42 Ligand Restrain.mp4
|
33.0 MB
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011 Practical-42 Ligand Restrain_en.srt
|
7.7 KB
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012 Practical-43 Thermostats.mp4
|
8.8 MB
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012 Practical-43 Thermostats_en.srt
|
2.9 KB
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013 Practical-44 Equilibration.mp4
|
23.5 MB
|
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013 Practical-44 Equilibration_en.srt
|
5.6 KB
|
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014 Practical-44 Production Phase.mp4
|
19.7 MB
|
|
014 Practical-44 Production Phase_en.srt
|
3.4 KB
|
|
015 Commands-to-Analyze-the-Molecular-Dynamics-Simulation-Data-of-Ligand-Protein-Complex.pdf
|
65.9 KB
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015 Practical-44 Analysis.mp4
|
62.6 MB
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015 Practical-44 Analysis_en.srt
|
9.4 KB
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/.../08 - Module-7 Virtual Screening of Drugs/
|
|
001 Importance of Virtual Screening.mp4
|
24.4 MB
|
|
001 Importance of Virtual Screening_en.srt
|
1.9 KB
|
|
002 Introduction to Virtual Screening.mp4
|
17.8 MB
|
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002 Introduction to Virtual Screening_en.srt
|
3.8 KB
|
|
003 Fundamental Steps of Virtual Screening.mp4
|
6.8 MB
|
|
003 Fundamental Steps of Virtual Screening_en.srt
|
4.7 KB
|
|
004 Commands Needed to Run Virtual Screening.mp4
|
1.7 MB
|
|
004 Commands Needed to Run Virtual Screening_en.srt
|
0.9 KB
|
|
004 Commands-to-Run-Vina-for-Virtual-Screening-in-Linux-Environment.pdf
|
71.1 KB
|
|
005 Practical-46 Installation of Open Babel and Auto-Dock Vina In Linux (Ubuntu).mp4
|
26.2 MB
|
|
005 Practical-46 Installation of Open Babel and Auto-Dock Vina In Linux (Ubuntu)_en.srt
|
5.7 KB
|
|
006 Practical-47 Preparation of Protein Receptor for Virtual Screening.mp4
|
11.8 MB
|
|
006 Practical-47 Preparation of Protein Receptor for Virtual Screening_en.srt
|
3.5 KB
|
|
007 Practical-48 Downloading of Thousands of Ligands in One Click.mp4
|
45.2 MB
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007 Practical-48 Downloading of Thousands of Ligands in One Click_en.srt
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7.5 KB
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008 Practical-49 Preparation of Ligands for Docking.mp4
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26.1 MB
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008 Practical-49 Preparation of Ligands for Docking_en.srt
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12.0 KB
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009 Practical-50 Setting Grid and Writing of Configuration File.mp4
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7.6 MB
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009 Practical-50 Setting Grid and Writing of Configuration File_en.srt
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3.8 KB
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010 Practical-51 Docking of Ligands with Receptors in Vina.mp4
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29.2 MB
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010 Practical-51 Docking of Ligands with Receptors in Vina_en.srt
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6.6 KB
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010 Vina-linux.pl
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0.4 KB
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011 Practical-52 Analysis.mp4
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12.5 MB
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011 Practical-52 Analysis_en.srt
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2.2 KB
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/.../09 - Recent Updates in Structural Biology For MD and Docking/
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001 Protein Databank Update.mp4
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48.4 MB
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001 Protein Databank Update_en.srt
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6.5 KB
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/~Get Your Files Here !/
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Bonus Resources.txt
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0.4 KB
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Total files 262
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