DevCourseWeb com Udemy Python for Biologists

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Get Bonus Downloads Here.url

/.../1. Requirements and tips for talking with a computer/

1. Introduction.mp4

10. Tips for writing the variable name or identifier.mp4

11. Correct the code.html

12. Summary.mp4

13. Reduce the risk of using reserved words with the case sensitivity feature.mp4

14. Correct the code.html

15. Summary.mp4

16. The difference between comments and codes.mp4

17. Correct the code.html

18. Summary.mp4

19. Receiving and processing user data and producing output..mp4

2. Defining the programming language and installing python on Windows and Mac.mp4

20. Correct the code.html

21. Summary.mp4

22. Optional tips for organizing variables.mp4

23. Summary.mp4

3. Ways to write and run python codes Interactive interpreter.mp4

4. Ways to write and run python codes Python script.mp4

5. Ways to write and run python codes IDE.mp4

6. Summary.mp4

7. Full course scripts.html

8. Create a variable.mp4

9. Create a variable.html

/.../1. Requirements and tips for talking with a computer/C4/FASTQ/

__init__.py

extractIDs.py

fastq2fasta.py

qual.py

qual.txt

/.../1. Requirements and tips for talking with a computer/C4/FASTQ/__pycache__/

__init__.cpython-39.pyc

extractIDs.cpython-39.pyc

fastq2fasta.cpython-39.pyc

qual.cpython-39.pyc

/.../1. Requirements and tips for talking with a computer/C4/__pycache__/

s104.cpython-39.pyc

s105.cpython-39.pyc

s110.cpython-39.pyc

/.../1. Requirements and tips for talking with a computer/C4/

exampleFile.txt

hello.py

s1.py

s10.py

s100.py

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s99.py

strftime_format_codes.txt

z-e1-all-writelines.fasta

z-e1-all.fasta

z-e1-method1.fasta

z-e1-method2.fasta

z-e1.fasta

z-e2.txt

z-e3.txt

z-e4.txt

z-escape_characters.tab

z-geneID_3667.gb

/.../1. Requirements and tips for talking with a computer/C4/z-rna-seq/SRR6924568-MB/

SRR6924568_1.fastq-HQ_IDS.txt

SRR6924568_1.fastq-qual.txt

SRR6924568_2.fastq-HQ_IDS.txt

SRR6924568_2.fastq-qual.txt

/.../1. Requirements and tips for talking with a computer/C4/z-rna-seq/SRR7755529-GB/

MIOX-Gene.fasta

SRR7755529_1.fastq-extractIDs.fastq

SRR7755529_1.fastq-fastq2fasta.fasta

SRR7755529_1.fastq-qual.txt

/.../z-tRNA-rRNA_methyltransferase/

genomicDNA-RNA.fasta

mRNA.fasta

/.../10. Functions for handling tuple data type/

1. Obtain a tuple length, and minimum and maximum items of a tuple.mp4

/.../11. Functions and methods for handling dictionary data type/

1. Review.mp4

2. Obtain a dictionary length.mp4

3. Remove dictionary items.mp4

4. Copy a dictionary.mp4

5. Convert a tuple items into a dictionary keys.mp4

6. Control errors while accessing the dictionary keys.mp4

7. Convert a dictionary to a list of tuples and extract keys and values separately.mp4

8. Update a dictionary.mp4

/.../12. Handling files and operating systems/

1. Review.mp4

10. Summary.mp4

11. Open a file for read and write purposes.mp4

12. Summary.mp4

13. Open a file for write and read purposes.mp4

14. Summary.mp4

15. Open a file for append and read purposes.mp4

16. Summary.mp4

17. Dealing with the content of the open file for the purpose of reading.mp4

18. Dealing with read lines one by one.mp4

19. Output a list in a file.mp4

2. Summary.mp4

20. Read files with for loop Preserving memory from complexity.mp4

21. The second and preferred way to open files Don't be afraid to close files.mp4

22. Handle paths The current path and how to go and get the contents.mp4

23. Creating a folder or folders.mp4

24. Delete a folder.mp4

25. Delete folders.mp4

26. Rename a folder or folders.mp4

3. The modes for opening a file..mp4

4. Open a file for read-only purpose.mp4

5. Summary.mp4

6. Open a file for overwrite-only purpose.mp4

7. Convert fasta multi-lines to fasta two-lines Method1.mp4

8. Convert fasta multi-lines to fasta two-lines Method2.mp4

9. Open a file for append-only purpose.mp4

/.../13. Handling time and date/

1. Dealing with time and date.mp4

2. Which is faster Calculating the time taken for two GC content calculator codes.mp4

3. Dealing with a specific format of time and date in terms of output or reading.mp4

4. Wait in Python.mp4

/.../14. Creating python function Arranging and organizing codes in an effective format/

1. Modify some codes to use as examples.mp4

10. Summary.mp4

11. Argument for unlimited items.mp4

12. Summary.mp4

13. The lambda as an alternative function in case of small code.mp4

14. Summary.mp4

2. Modify some codes to use as examples.mp4

3. Create and call functions and the difference between print and return.mp4

4. Summary.mp4

5. The arguments and their function are pass-throughs of data across the function.mp4

6. Summary.mp4

7. Global (outside) variables and local (inside) variables.mp4

8. Summary.mp4

9. The required and default arguments and the argument keyword.mp4

/.../15. Modules and scripts as a small product for your code/

1. Import modules, see python paths, and import methods.mp4

10. Summary.mp4

2. Summary.mp4

3. Combine module and script using if name == main.mp4

4. Summary.mp4

5. Further clarification of the importance of if name == main.mp4

6. Summary.mp4

7. Further clarification of ways to import modules or functions within modules.mp4

8. Summary.mp4

9. Get global and local variables contained in functions.mp4

/.../16. Create a python package from scratch Producing a python application for users/

1. Obtain RNA-seq data from ENA Browser - European Nucleotide Archive.html

10. Improving the first module to receive quality and its percentage from the user.mp4

11. Correction of errors discovered in the first module.mp4

12. The end A short story for the last tip.mp4

2. Create the first module to estimate the quality of nucleotides in the FASTQ file.mp4

3. Completing the creation of the first module.mp4

4. Summary.mp4

5. Improve the first module to deal with several files.mp4

6. Create the second module to convert a FASTQ file to a FASTA.mp4

7. Modifications to the second module.mp4

8. Create the third module to extract specific IDs from the FASTQ.mp4

9. Create the package First module test.mp4

/.../2. Data containers in python (types and conversions)/

1. Refresh.mp4

10. Summary.mp4

11. The problem of receiving data, whether from the command interface or a file.mp4

12. Convert from an integer to a float or vice versa.mp4

13. Complete the code Convert from integer to float and vice versa.html

14. Work with the complex.mp4

15. Convert from a number to a string and vice versa.mp4

16. Complete the code Convert from a number to a string and vice versa.html

17. Complete the code Convert from a number to a string.html

18. Summary.mp4

19. Convert from a string to a list or tuple.mp4

2. Number data type.mp4

20. Complete the code Convert from a string to a list or tuple.html

21. Convert from a list or tuple to a dictionary.mp4

22. Summary.mp4

3. Create a variable that stores a number.html

4. String data type.mp4

5. Create a variable that stores a string.html

6. List and tuple data types.mp4

7. Create a variable that stores a list or tuple.html

8. Dictionary data type.mp4

9. Create a variable that stores a dictionary.html

/.../3. Access the items in the data containers/

1. Introduction.mp4

2. The forward index.mp4

3. The reverse index.mp4

4. Create a data type from items of another data type using the index.mp4

5. The dictionary key.mp4

6. Summary.mp4

/.../4. Congratulations, this is your first program using the Python language/

1. Prepare and save external data in a data type in python Create small database.mp4

2. The first code Unraveling the mystery of the IUPAC ambiguity codes.mp4

3. The second code The inverse of the first code.mp4

/.../5. Perform operations and set conditions or questions/

1. Introduction Arithmetic operators Addition and subtraction.mp4

10. Create a code that calculates extra nucleotides in DNA before translation.mp4

11. Summary.mp4

12. Assignment operators.mp4

13. Summary.mp4

14. Comparison operators Equality.mp4

15. Comparison operators Greater than and less than.mp4

16. Summary.mp4

17. Create a code that compares two sequences in terms of both length and content.mp4

18. Summary.mp4

19. Membership operators.mp4

2. Arithmetic operators Multiplcation, division, floor division, and exponent.mp4

20. Summary.mp4

21. Create a code that searches for a restriction recognition site in DNA.mp4

22. Logical operators.mp4

23. Summary.mp4

24. Create a code that searches for MULTIPLE restriction recognition sites in DNA.mp4

25. Summary.mp4

26. Identity operators.mp4

27. Summary.mp4

28. Bitwise operators Convert from an integer to a binary and vice versa.mp4

29. Bitwise operators And, or, xor.mp4

3. Arithmetic operators Modulus.mp4

30. Bitwise operators 2s complement, and left and right shift.mp4

31. Summary.mp4

4. Summary.mp4

5. Arithmetic operators Handling string and list.mp4

6. Summary.mp4

7. Arithmetic operators Operator precedence.mp4

8. Summary.mp4

9. Create a code that calculates extra nucleotides in DNA before translation.mp4

/.../6. Decision making support/

1. If statement, if-else statement, and if-elif-else statement.mp4

2. Summary.mp4

3. Create a code that determines whether the sequence is DNA or RNA.mp4

4. Zero, non-zero, null, and non-null values.mp4

5. Nested if.mp4

/.../7. Repeat commands in loops/

1. The while loop.mp4

2. Summary.mp4

3. Calculating the GC content using the while loop.mp4

4. The for loop.mp4

5. Calculating the GC content using the for loop.mp4

6. Control loops with break, continue, and pass.mp4

7. Summary.mp4

/.../8. Functions and methods for handling string data type/

1. Review.mp4

10. Center a string to total width columns.mp4

11. Left and right adjustment of a string for the total width of the columns.mp4

12. Count how many times a string or substring occurs in a string.mp4

13. Test if a string or substring of the string ends with a certain suffix.mp4

14. Test if a string or substring of the string starts with a certain prefix.mp4

15. Expand tabs in string to multiple spaces.mp4

16. Find starting index of a string or substring that occurs in a string.mp4

17. Find starting index of a string or substring that occurs backwards in a string.mp4

18. Search starting index of a string or substring that occurs in a string.mp4

19. Search starting index of a string or substring that occurs backwards in a string.mp4

2. Summary.mp4

20. Test if a string contains alphanumeric character(s).mp4

21. Test if a string contains alphabetic character(s).mp4

22. Test if a string contains digits only.mp4

23. Test if a string contains upper- or lower-case and convert from one to another.mp4

24. The difference between numbers test.mp4

25. Test if a string contains white space(s).mp4

26. Test if a string is a title and create title.mp4

27. Concatenate list or tuple items into a string.mp4

28. Obtain a string length.mp4

29. Remove leading or tailing character(s) or from both sites of a string part 1.mp4

3. Non-printable characters.mp4

30. Remove leading or tailing character(s) or from both sites of a string part 2.mp4

31. Replace a string or substring of a string part 1.mp4

32. Replace a string or substring of a string part 2.mp4

33. Create a translation table and translate a string.mp4

34. Obtain the minimum and maximum character from a string.mp4

35. Split a string based on delimiter string or substring to a list of substrings.mp4

36. Swap string characters from upper- to lowercase and vice versa.mp4

37. Fill a string using zero(s).mp4

4. Summary.mp4

5. String formatting part 1.mp4

6. Summary.mp4

7. String formatting part 2.mp4

8. Summary.mp4

9. Capitalize the first letter of a string.mp4

/.../9. Functions and methods for handling list data type/

1. Review.mp4

10. Remove a duplicate items of a list.mp4

2. Obtain a list length, and minimum and maximum items of a list.mp4

3. Add an item to the end or certain location of a list.mp4

4. Extend a list by another list.mp4

5. Count how many times an item occurs in a list.mp4

6. Search starting index of an item that occurs in a string.mp4

7. Remove an item using its index or content.mp4

8. Sort list items.mp4

9. Reverse the order of a list.mp4

/~Get Your Files Here !/

Bonus Resources.txt

Total files 370